sigminer (version 1.2.5)

read_sv_as_rs: Read Structural Variation Data as RS object

Description

Read Structural Variation Data as RS object

Usage

read_sv_as_rs(input)

Arguments

input

a data.frame or a file with the following columns: "sample", "chr1", "start1", "end1", "chr2", "start2", "end2", "strand1", "strand2", "svclass"

Value

a list

Examples

# NOT RUN {
sv <- readRDS(system.file("extdata", "toy_sv.rds", package = "sigminer", mustWork = TRUE))
rs <- read_sv_as_rs(sv)
# }
# NOT RUN {
tally_rs <- sig_tally(rs)
# }