liftr (version 0.6)

render_docker: Render Dockerized R Markdown Documents

Description

Render dockerized R Markdown documents using Docker containers.

Usage

render_docker(input = NULL, tag = NULL, container_name = NULL,
  cache = TRUE, purge_info = TRUE, build_args = NULL, run_args = NULL,
  ...)
drender(...)

Arguments

input

Input file to render in Docker container.

tag

Docker image name to build, sent as docker argument -t. If not specified, it will use the same name as the input file.

container_name

Docker container name to run. If not specified, will use a randomly generated name.

cache

Logical. Controls the --no-cache argument in docker run. Setting this to be TRUE can accelerate the rendering speed substantially for repeated/interactive rendering since the Docker image layers will be cached, with only the changed (knitr related) image layer being updated. Default is TRUE.

purge_info

Logical. Should we write the Docker container and image information to a YAML file for purging later? Default is TRUE.

build_args

A character string specifying additional docker build arguments. For example, --pull=true -m="1024m" --memory-swap="-1".

run_args

A character string specifying additional docker run arguments. For example, --privileged=true.

...

Additional arguments passed to render.

Value

• A list containing the image name, container name, and Docker commands will be returned.

• An YAML file ending with .docker.yml storing the image name, container name, and Docker commands for rendering this document will be written to the directory of the input file.

• The rendered output will be written to the directory of the input file.

Details

Before using this function, please run lift on the RMD document first to generate the Dockerfile.

After a successful rendering, you will be able to clean up the Docker image with purge_image.

Please see vignette('liftr-intro') for details of the extended YAML metadata format and system requirements for rendering dockerized R Markdown documents.

Examples

# NOT RUN {
# copy example file
dir_example = paste0(tempdir(), "/liftr-tidyverse/")
dir.create(dir_example)
file.copy(system.file("examples/liftr-tidyverse.Rmd", package = "liftr"), dir_example)

# containerization
input = paste0(dir_example, "liftr-tidyverse.Rmd")
lift(input)

# }
# NOT RUN {
# render the document with Docker
render_docker(input)

# view rendered document
browseURL(paste0(dir_example, "liftr-tidyverse.pdf"))

# purge the generated Docker image
purge_image(paste0(dir_example, "liftr-tidyverse.docker.yml"))
# }