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phytools (version 0.3-72.1)

reorderSimmap: Reorder edges of a simmap tree

Description

Function returns a reordered modified "phylo" object by using reorder.phylo but then sorting the additional elements $mapped.edge and $maps to have the same order as $edge.

Usage

reorderSimmap(tree, order="cladewise")

Arguments

tree
a modified object of class "phylo".
order
either "cladewise" or "pruningwise" (see reorder.phylo).

Value

  • A modified object of class "phylo".

See Also

reorder.phylo, plotSimmap