report_bootstrap_p_value

a (list of) result from <a rd-options="" href="/link/sig_fit_bootstrap?package=sigminer&version=1.2.5" data-mini-rdoc="sigminer::sig_fit_bootstrap">sig_fit_bootstrap</a>.

a vector of relative exposure threshold for calculating p values.

thresholds

See examples in <a rd-options="" href="/link/sig_fit_bootstrap?package=sigminer&version=1.2.5" data-mini-rdoc="sigminer::sig_fit_bootstrap">sig_fit_bootstrap</a>.

Genomic alterations including single nucleotide
substitution, copy number alteration, etc. are the major force for
cancer initialization and development. Due to the specificity of
molecular lesions caused by genomic alterations, we can generate
characteristic alteration spectra, called 'signature' (Wang, Shixiang,
et al. (2020) <DOI:10.1101/2020.04.27.20082404> & Alexandrov, Ludmil
B., et al. (2020) <DOI:10.1038/s41586-020-1943-3> & Macintyre, Geoff,
et al. (2018) <DOI:10.1038/s41588-018-0179-8>). This package helps
users to extract, analyze and visualize signatures from genomic
alteration records, thus providing new insight into cancer study.

Shixiang Wang

sigminer

Extract, Analyze and Visualize Mutational Signatures for Genomic
Variations

Ziyu Tao

Huimin Li

Tao Wu

Xue-Song Liu

Geoffrey Macintyre

Anand Mayakonda

report_bootstrap_p_value function

a (list of) result from <a rd-options='' href='sig_fit_bootstrap'>sig_fit_bootstrap</a>.

See examples in <a rd-options='' href='sig_fit_bootstrap'>sig_fit_bootstrap</a>.

report_bootstrap_p_value: Report P Values from bootstrap Results

Description

Usage

Arguments

Value