This function reconstructs a number of datasets, using the R
parallel package to distribute the reconstruction of
multiple datasets across CPUs. If datasets is not specified
the function recurses through a directory tree starting at
tldir, determining whether the directory contains valid raw
data and markup, and performing the reconstruction if it does.
retistruct.batch(tldir = ".", outputdir = tldir, datasets = NULL,
device = "pdf", titrate = FALSE, cpu.time.limit = 3600,
mc.cores = getOption("cores"))If datasets is not specified, the top level of the directory tree through which to recurse in order to find datasets.
directory in which to dump a log file and images
Vector of dataset directories to reconstruct
string indicating what type of graphics output required. Options are "pdf" and "png".
Whether to "titrate" the reconstruction for
different values of phi0. See titrate.reconstructedOutline.
amount of CPU after which to terminate the process
The number of cores to use. Defaults to the total number available.