sybil (version 1.1.2)

rmReact: Remove Reactions From a Model

Description

The function rmReact removes reactions from a model.

Usage

rmReact(model, react, rm_met = TRUE)

Arguments

model

An object of class modelorg

react

An object of class reactId, a numeric vector, or a character vector containing reaction id's.

rm_met

Logical: also remove unused metabolites (default: TRUE).

Value

• An object of class modelorg.

encoding

utf8

Details

The argument react is evaluated by the function checkReactId.

References

Becker, S. A., Feist, A. M., Mo, M. L., Hannum, G., Palsson, B. Ø. and Herrgard, M. J. (2007) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox. Nat Protoc 2, 727--738.

Schellenberger, J., Que, R., Fleming, R. M. T., Thiele, I., Orth, J. D., Feist, A. M., Zielinski, D. C., Bordbar, A., Lewis, N. E., Rahmanian, S., Kang, J., Hyduke, D. R. and Palsson, B. Ø. (2011) Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0. Nat Protoc 6, 1290--1307.

See Also

modelorg, reactId and checkReactId

Examples

data(Ec_core)
  Ec_r <- rmReact(Ec_core, c("ATPM", "Biomass"))