rnb.execute.quality

Methylation dataset as an object of class <code>RnBeadSet</code>,
<code>RnBeadRawSet</code> or <code>RnBiseqSet</code>.

object

<code>character</code> vector of length <code>1</code> giving the type of genomic regions for which the
quality control information is summarized.

type

Flag indicating if sequencing coverage information is summarized and returned. This
parameter is considered only when <code>object</code> is of type <code>RnBiseqSet</code>.

qc.coverage.plots

Flag specifying whether diagnostic output should be written to the console or to the
RnBeads logger in case the latter is initialized.

verbose


Performs quality control calculations on the loaded DNA methylation data set.


RnBeads facilitates comprehensive analysis of various types of DNA
methylation data at the genome scale.

Fabian Mueller

RnBeads

rnb.execute.quality function

Methylation dataset as an object of class <code><linkS4class>RnBeadSet</linkS4class></code>,
<code><linkS4class>RnBeadRawSet</linkS4class></code> or <code><linkS4class>RnBiseqSet</linkS4class></code>.

Flag indicating if sequencing coverage information is summarized and returned. This
parameter is considered only when <code>object</code> is of type <code><linkS4class>RnBiseqSet</linkS4class></code>.

Performs quality control calculations on the loaded DNA methylation data set.

rnb.execute.quality: rnb.execute.quality

Description

Usage

Arguments

Value

Details