Learn R Programming

RnBeads (version 1.4.0)

rnb.region.types: rnb.region.types

Description

Gets the supported region annotations for a given genome assembly.

Usage

rnb.region.types(assembly = "hg19")

Arguments

assembly
Genome assembly of interest. See rnb.get.assemblies for the list of supported genomes.

Value

Region types supported by RnBeads in the form of a character vector. The built-in ones are "cpgislands", "genes", "promoters" and "tiling". The names of all custom region definitions are also included in the returned vector.

See Also

rnb.get.annotation, rnb.set.annotation

Examples

Run this code

"promoters" %in% rnb.region.types() # TRUE


Run the code above in your browser using DataLab