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meconetcomp (version 0.6.1)

Compare Microbial Networks of 'trans_network' Class of 'microeco' Package

Description

Compare microbial co-occurrence networks created from 'trans_network' class of 'microeco' package . This package is the extension of 'trans_network' class of 'microeco' package and especially useful when different networks are constructed and analyzed simultaneously.

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Install

install.packages('meconetcomp')

Monthly Downloads

347

Version

0.6.1

License

GPL-3

Issues

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Repository

https://github.com/ChiLiubio/meconetcomp

Maintainer

Chi Liu

Last Published

February 24th, 2025

Functions in meconetcomp (0.6.1)

subnet_property

Calculate properties of sub-networks selected according to features in samples

The soil_amp data

soil_measure_diversity

The soil_measure_diversity data

Introduction to meconetcomp package (https://github.com/ChiLiubio/meconetcomp)

Taxonomic sum of linked nodes in edges across networks

Generate a microtable object with paired nodes distributions of edges across networks

Get edge property table for each network

Calculate the cohesion of samples for each network

Get node property table for each network

cal_network_attr

Calculate network topological property for each network

Generate a microtable object with node distributions across networks

Assign modules to each network

edge_node_distance

Perform the distance distribution of paired nodes in edges across networks.

Extract subset of network according to the edge intersection of networks

Calculate robustness across networks.

Calculate the vulnerability of each node for each network

soil_amp_network

The soil_amp_network data

The stool_met data