DChIPRep (version 1.2.3)

runTesting: Run the tests on a DChIPRepResults object.

Description

This function runs the testing on a DChIPRepResults object. It adds the FDR calculations and the result table to the DChIPRepResults object.

Usage

"runTesting"(object, lfcThreshold = 0.05, plotFDR = FALSE, ...)

Arguments

object

A DChIPRepResults object.

lfcThreshold

A non-negative threshold value, which determines the null hypothesis. The null hypothesis is $H_0: |log2(FC)| > $ lfcThreshold

plotFDR

If set to TRUE a plot showing the estimated FDRs will be displayed

...

not used currently

Value

a modified DChIPRepResults object containing the testing results

See Also

resultsDChIPRep

Examples

data(testData)
dcr <- DChIPRepResults(testData)
dcr <- runTesting(dcr)