pophelper (version 1.2.0)

runsToDfStructure: Convert STRUCTURE run files to R dataframes.

Description

Takes one or more STRUCTURE output files and converts each of them to separate dataframes.

Usage

runsToDfStructure(files = NULL, indlabfromfile = FALSE)

Arguments

files

A character or character vector of one or more STRUCTURE run files. Use choose.files(multi=TRUE) to select interactively.

indlabfromfile

A logical indicating if individual labels must be read from input file and used as row names for resulting data frame. Spaces in labels may be replaced with _.

Value

If a single file is selected, a single dataframe is returned. If multiple files are selected, a list with multiple dataframes is returned. If individual labels are present in the STRUCTURE file, they are added to the dataframe as row names.

See Also

runsToDfTess, runsToDfMatrix

Examples

# NOT RUN {
slist <- list.files(path=system.file("files/structure",package="pophelper"),full.names=TRUE)
#create a dataframe
runsToDfStructure(slist[1])

#use ind names from file
runsToDfStructure(slist[1],indlabfromfile=T)

#create a list of dataframes
runsToDfStructure(slist)
# }