scape-package: Statistical Catch-at-Age Plotting Environment
Description
Import and plot results from statistical catch-at-age models, used in
fisheries stock assessments.concept
Fisheries stock assessmentDetails
Import model results:
ll{
importCol Coleraine model output
}
Plot model fit to data:
ll{
plotCA catch at age
plotCL catch at length
plotIndex abundance index
plotLA length at age
}
Plot derived quantities:
ll{
plotB biomass, recruitment, and landings
plotN numbers at age
plotSel selectivity and maturity
}
Examples:
ll{
x.cod, x.ling, x.oreo,
x.sbw cod, ling, oreo, and whiting assessments
}
The vignette scape/doc/dsc.pdf provides background information
and introduces the design of scape and scapeMCMC, but is
not updated. Additional details are found on the
help(package="scape") page.See Also
All scape graphics are trellis plots, rendered with the
lattice package. Once the best model(s) have been chosen, the
scapeMCMC package can be used to diagnose MCMC runs.