scoreplot(object, ...)
## S3 method for class 'default':
scoreplot(object, comps = 1:2, labels, identify = FALSE, type = "p",
xlab, ylab, \dots)
## S3 method for class 'scores':
plot(x, \dots)loadingplot(object, ...)
## S3 method for class 'default':
loadingplot(object, comps = 1:2, scatter = FALSE, labels,
identify = FALSE, type, lty, lwd = NULL, pch, cex = NULL,
col, legendpos, xlab, ylab, pretty.xlabels = TRUE, xlim, \dots)
## S3 method for class 'loadings':
plot(x, \dots)
corrplot(object, comps = 1:2, labels, radii = c(sqrt(1/2), 1),
identify = FALSE, type = "p", xlab, ylab, ...)
identify
) returns.plot.scores
is simply a wrapper calling scoreplot
,
passing all arguments. Similarly for plot.loadings
. scoreplot
is generic, currently with a default method that
works for matrices and any object for which scores
returns a matrix. The default scoreplot
method
makes one or more scatter plots of the scores,
depending on how many components are selected. If one or two
components are selected, and identify
is TRUE
, the
function identify
is used to interactively identify
points.
Also loadingplot
is generic, with a default method that works
for matrices and any object where loadings
returns a
matrix. If scatter
is TRUE
, the default method works exactly
like the default scoreplot
method. Otherwise, it makes a lineplot of the selected
loading vectors, and if identify
is TRUE
,
uses identify
to interactively identify points. Also,
if legendpos
is given, a legend is drawn at the position
indicated.
corrplot
works exactly like the default scoreplot
method, except that at least two components must be selected. The
radii
. Each
point corresponds to an $X$ variable. The squared distance
between the point and origin equals the fraction of the variance of the
variable explained by the components in the panel. The default
radii
corresponds to 50% and 100% explained variance.
scoreplot
, loadingplot
and corrplot
can also be
called through the plot method for mvr
objects, by specifying
plottype
as "scores"
, "loadings"
or
"correlation"
, respectively. See plot.mvr
.
The argument labels
can be a vector of labels or one of
"names"
and "numbers"
.
If a scatter plot is produced (i.e., scoreplot
, corrplot
, or
loadingplot
with scatter = TRUE
), the labels
are used instead of plot symbols for the points plotted. If
labels
is "names"
or "numbers"
, the row
names or row numbers of the matrix (scores, loadings or correlation
loadings) are used.
If a line plot is produced (i.e., loadingplot
), the labels are
used as $x$ axis labels. If labels
is "names"
or
"numbers"
, the variable names are used as labels, the
difference being that with "numbers"
, the variable names are
converted to numbers, if possible. Variable names of the forms
"number" or "number text" (where the space is optional),
are handled.
The argument pretty.xlabels
is only used when labels
is
specified for a line plot. If TRUE
(default), the code tries
to use a labels
is
"numbers"
, it also uses the numerical values of the labels for
horisontal spacing. If one has excluded parts of the spectral
region, one might therefore want to use pretty.xlabels = FALSE
.
mvr
, plot.mvr
,
scores
, loadings
, identify
,
legend
data(yarn)
mod <- plsr(density ~ NIR, ncomp = 10, data = yarn)
## These three are equivalent:
scoreplot(mod, comps = 1:5)
plot(scores(mod), comps = 1:5)
plot(mod, plottype = "scores", comps = 1:5)
loadingplot(mod, comps = 1:5)
loadingplot(mod, comps = 1:5, legendpos = "topright") # With legend
loadingplot(mod, comps = 1:5, scatter = TRUE) # Plot as scatterplots
corrplot(mod, comps = 1:2)
corrplot(mod, comps = 1:3)
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