seedset-class

Object representing the seed sets of a given metabolic network

An implementation of the reverse ecology framework. Reverse ecology
    refers to the use of genomics to study ecology with no a priori assumptions 
    about the organism(s) under consideration, linking organisms to their
    environment. It allows researchers to reconstruct the metabolic networks and
    study the ecology of poorly characterized microbial species from their 
    genomic information, and has substantial potentials for microbial community 
    ecological analysis.

Yang Cao

RevEcoR

Reverse Ecology Analysis on Microbiome

seedset-class function

<ul><li>getGsMN,<code>signature(object = "seedset")</code>:
       get the genome scale metabolic network whose seed set is caculated</li></ul>
     <item>len, <code>signature(object = "seedset")</code>:
       return the number of source SCC</item>
     <item>seedSize, <code>signature(object = "seedset")</code>:
       returns the sizes of each source SCCs</item>
     <item>nonseed, <code>signature(object = "seedset")</code>:
       the non seeds of the GsMN</item>
     <item>show, <code>signature(object = "seedset")</code>:
       show the short summary of a seedset class</item>
     <item>confidencescore, <code>signature(object = "seedset")</code>:
       confidence score of the seed set</item>

seedset-class: `seedset-class`

Description

Arguments

method

See Also