segs2Granges

data.frame with loc.start, loc.end, and chrom columns, like from segTable or runCBS

segs

GenoSet contains a number of functions that work on segments. Many work on a data.frame of
segments, like segTable and runCBS. This function converts one of these tables in a GRanges.
The three columns specifying the ranges become the GRanges and all other columns go into the 'mcols'
portion of the GRanges object.

GenoSet provides an extension of the RangedSummarizedExperiment class
    with additional API
    features. This class provides convenient and fast methods for working with
    segmented genomic data. Additionally,
    GenoSet provides the class RleDataFrame which stores runs of data along the
    genome for multiple samples and provides very fast summaries of arbitrary
    row sets (regions of the genome).

segs2Granges: GRanges from segment table

Description

Usage

Arguments

Value

See Also