SELEX (version 1.4.0)

selex.exampledata: Extract example data files

Description

A function used to extract the sample files embedded in this package. The package contains 2 FASTQ files (R0.fastq.gz and ExdHox.R2.fastq.gz, and an XML configuration file (config.xml).

Usage

selex.exampledata(outputFolder)

Arguments

outputFolder

Location on disk where the files should be extracted.

Value

See Also

selex.defineSample

Examples

#Initialize the SELEX package
#options(java.parameters="-Xmx1500M")
#library(SELEX) 

# Configure the current session
workDir = file.path(".", "SELEX_workspace")
selex.config(workingDir=workDir,verbose=FALSE, maxThreadNumber= 4)

# Extract sample data from package, including XML database
exampleFiles = selex.exampledata(workDir)