sigminer (version 0.1.11)

sig_get_activity: Get signature activity

Description

Get signature activity

Usage

sig_get_activity(nmfObj)

Arguments

nmfObj

a NMF result object which is an element return from sig_extract or run results of NMF package.

Value

a list

See Also

Other signature analysis series function: sig_assign_samples, sig_estimate, sig_extract, sig_get_correlation, sig_get_similarity, sig_prepare, sig_summarize_subtypes

Examples

# NOT RUN {
# Load copy number signature
load(system.file("extdata", "toy_copynumber_signature.RData",
  package = "sigminer", mustWork = TRUE
))
# Get activity of signatures
sig_activity <- sig_get_activity(res$nmfObj)
# }