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rstan (version 2.8.1)

R Interface to Stan

Description

User-facing R functions are provided by this package to parse, compile, test, estimate, and analyze Stan models by accessing the header-only Stan library provided by the 'StanHeaders' package. The Stan project develops a probabilistic programming language that implements full Bayesian statistical inference via Markov Chain Monte Carlo and (optionally penalized) maximum likelihood estimation via optimization. In both cases, automatic differentiation is used to quickly and accurately evaluate gradients without burdening the user with the need to derive the partial derivatives.

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Version

Install

install.packages('rstan')

Monthly Downloads

60,357

Version

2.8.1

License

GPL (>= 3)

Maintainer

Ben Goodrich

Last Published

November 19th, 2015

Functions in rstan (2.8.1)

rstan-internal

Internal Functions and Methods
extract_sparse_parts

Extract the compressed representation of a sparse matrix
set_cppo

Defunct function to set the compiler optimization level
read_rdump

Read data in an Rdump file to a list
lookup

Look up the Stan function that corresponds to a Rfunction or name.
makeconf_path

Obtain the full path of file Makeconf
rstan-package

RStan --- Rinterface to Stan
monitor

Compute the summary for MCMC simulation samples and monitor the convergence
stan

Fit a model using Stan
rstan.package.skeleton

Create a Skeleton for a New Source Package with Stan Programs
plot-methods

Plots for stanfit objects
stan_demo

Demonstrate examples included in Stan
sflist2stanfit

Merge a list of stanfit objects into one
rstan_options

Set and read options used in RStan
as.array

Create array, matrix, or data.frame objects from samples in a stanfit object
optimizing-methods

optimizing: obtain a point estimate by maximizing the joint posterior
stanfit-class

Class stanfit: fitted Stan model
traceplot-methods

traceplot: draw the traces of the sample
extract-methods

extract: extract samples from fitted Stan model
pairs.stanfit

Create a matrix of output plots from a stanfit object
stan_version

Obtain the version of Stan
Diagnostic plots

Diagnostic plots
stan_rdump

Dump the data for a Stan model to Rdump file in the limited format that Stan can read.
plotting-functions

RStan Plotting Functions
sampling-methods

sampling: draw samples from Stan model
Plots

ggplot2 for RStan
print

Print a summary for a fitted model represented by a stanfit object
rstan_gg_options

Set default appearance options
log_prob-methods

model's log_prob and grad_log_prob functions
stanmodel-class

Class representing model compiled from C++
stanc

Translate Stan model specification to C++ code
expose_stan_functions

Expose user-defined Stan functions to Rfor testing and simulation
read_stan_csv

Read CSV files of samples generated by (R)Stan into a stanfit object
stan_model

Construct a Stan model