stopwords_miretrieve

Data frame containing English stop words, PubMed stop words,
and common 2-gram stopwords. English stop words are based on
tidytext::stop_words, while PubMed stop words are manually curated from
PubMed abstracts

datasets

Providing tools for microRNA (miRNA) text mining.
miRetrieve summarizes miRNA literature by extracting, counting, and
analyzing miRNA names, thus aiming at gaining biological insights into a
large amount of text within a short period of time. To do so, miRetrieve
uses regular expressions to extract miRNAs and tokenization to
identify meaningful miRNA associations. In addition, miRetrieve uses
the latest miRTarBase version 8.0 (Hsi-Yuan Huang et al. (2020)
"miRTarBase 2020: updates to the experimentally validated microRNA<e2><80><93>target
interaction database" <doi:10.1093/nar/gkz896>) to display field-specific
miRNA-mRNA interactions. The most important functions are available as a
Shiny web application under <https://miretrieve.shinyapps.io/miRetrieve/>.

Julian Friedrich

miRetrieve

miRNA Text Mining in Abstracts

Hans-Peter Hammes

Guido Krenning

stopwords_miretrieve function

Tibble.<ul>
<li><code>word</code>: Column containing stop words. Pulled from various PubMed
abstracts.</li>
<li><code>lexicon</code>: Column specifying lexicon.</li>
</ul>

stopwords_miretrieve: Stop words for text mining with miRetrieve

Description

Usage

Arguments

Format