sgof (version 2.3)

summary.SGoF: Summary of a SGoF object

Description

Summary of the most important results given by the Conservative SGoF procedure.

Usage

# S3 method for SGoF
summary(object, …)

Arguments

object

A SGoF object.

…

Additional arguments affecting the summary produced.

Value

Rejections

The number of effects declared by SGoF.

FDR

The estimated false discovery rate.

Adjusted.pvalues

Table of adjusted p-values falling under gamma.

References

Castro Conde I and de U<U+00F1>a <U+00C1>lvarez J (2015). Adjusted p-values for SGoF multiple test procedure. Biometrical Journal; 57(1): 108-122. DOI: 10.1002/bimj.201300238

Dalmasso C, Broet P and Moreau T (2005) A simple procedure for estimating the false discovery rate. Bioinformatics 21:660--668

de U<U+00F1>a <U+00C1>lvarez J (2011). On the statistical properties of SGoF multitesting method. Statistical Applications in Genetics and Molecular Biology, Vol. 10, Iss. 1, Article 18.

See Also

SGoF,plot.SGoF

Examples

# NOT RUN {
p<-runif(387)^2  #387 independent p-values, non-uniform intersection null violated

res<-SGoF(p)
summary(res)   #number of rejected nulls, estimated FDR


# }