qtl (version 1.46-2)

summary.comparegeno: Print pairs of individuals with similar genotype data.

Description

Prints a summary the output from comparegeno that includes pairs of individuals whose proportion of matching genotypes is above a chosen threshold.

Usage

# S3 method for comparegeno
summary(object, thresh=0.9, …)

Arguments

object

An object of class comparegeno, the output of the function comparegeno.

thresh

Threshold on the proportion of matching genotypes.

…

Ignored at this point.

Value

A data frame with each row being a pair of individuals and columns including the individual identifiers (via getid, or just as numeric indexes) along with the proportion of matching genotypes.

See Also

comparegeno, plot.comparegeno

Examples

# NOT RUN {
data(fake.f2)
cg <- comparegeno(fake.f2)
summary(cg, 0.7)
# }