stepwise (version 0.3)

summary.phylpro: Summary of a phylpro object

Description

Print a summary of a phylpro object

Usage

"summary"(object, ...)

Arguments

object

A list object of class phylpro output by the phylpro function

...

Additional arguments to the summary function (currently unused)

Value

siteWinlocs

Window locations with significant recombination signal

siteCorrs

The minimum correlation at these window locations

target.seqs

The target sequence(s) that give the minimum correlation at each window location

Details

The output of phylpro includes information on all site- and target sequence-specific correlations that exceed the 90th percentile of the permutation distribution. The summary.phylpro function computes minimum site-specific measures (i.e. minima over all target-sequence correlations from the same site) and reports all target sequences that tied for these minimum values.

See Also

phylpro