qtl (version 1.38-4)

summary.scanoneboot: Bootstrap confidence interval for QTL location

Description

Calculates a bootstrap confidence interval for QTL location, using the bootstrap results from scanoneboot.

Usage

## S3 method for class 'scanoneboot':
summary(object, prob=0.95, expandtomarkers=FALSE, \dots)

Arguments

object

Output from scanoneboot.

prob

Desired coverage.

expandtomarkers

If TRUE, the interval is expanded to the nearest flanking markers.

...

Ignored at this point.

Value

• An object of class scanone, indicating the position with the maximum LOD, and indicating endpoints for the estimated bootstrap confidence interval.

See Also

scanoneboot, plot.scanoneboot, lodint, bayesint

Examples

data(fake.f2)
fake.f2 <- calc.genoprob(fake.f2, step=1, err=0.001)
bootoutput <- scanoneboot(fake.f2, chr=13, method="hk")

summary(bootoutput)