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prodlim (version 2019.11.13)

Product-Limit Estimation for Censored Event History Analysis

Description

Fast and user friendly implementation of nonparametric estimators for censored event history (survival) analysis. Kaplan-Meier and Aalen-Johansen method.

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Version

Install

install.packages('prodlim')

Monthly Downloads

129,133

Version

2019.11.13

License

GPL (>= 2)

Maintainer

Thomas Alexander Gerds

Last Published

November 17th, 2019

Functions in prodlim (2019.11.13)

checkCauses

Check availability of a cause in competing risk settings
SmartControl

Function to facilitate the control of arguments passed to subroutines.
Hist

Create an event history response variable
SimCompRisk

Simulate competing risks data
List2Matrix

Reduce list to a matrix or data.frame with names as new columns
backGround

Background and grid color control.
SimSurv

Simulate survival data
EventHistory.frame

Event history frame
PercentAxis

Percentage-labeled axis.
atRisk

Drawing numbers of subjects at-risk of experiencing an event below Kaplan-Meier and Aalen-Johansen plots.
confInt

Add point-wise confidence limits to the graphs of Kaplan-Meier and Aalen-Johansen estimates.
crModel

Competing risks model for simulation
getEvent

Extract a column from an event history object.
dimColor

Dim a given color to a specified density
meanNeighbors

Helper function to obtain running means for prodlim objects.
getStates

States of a multi-state model
model.design

Extract a design matrix and specials from a model.frame
jackknife

Compute jackknife pseudo values.
markTime

Marking product-limit plots at the censored times.
leaveOneOut

Compute jackknife pseudo values.
plot.Hist

Box-arrow diagrams for multi-state models.
plotCompetingRiskModel

Plotting a competing-risk-model.
neighborhood

Nearest neighborhoods for kernel smoothing
plot.prodlim

Plotting event probabilities over time
parseSpecialNames

Parse special terms
print.prodlim

Print objects in the prodlim library
survModel

Survival model for simulation
quantile.prodlim

Quantiles for Kaplan-Meier and Aalen-Johansen estimates.
plotIllnessDeathModel

Plotting an illness-death-model.
redist

Calculation of Efron's re-distribution to the right algorithm to obtain the Kaplan-Meier estimate.
summary.prodlim

Summary method for prodlim objects.
summary.Hist

Summary of event histories
prodlim

Functions for estimating probabilities from right censored data
predictSurvIndividual

Predict individual survival probabilities
stopTime

Stop the time of an event history object
predict.prodlim

Predicting event probabilities from product limit estimates
strip.terms

Strip special functions from terms
row.match

Identifying rows in a matrix or data.frame
sindex

Index for evaluation of step functions.