testQuantiles

theoreticalCumDist

for (unspecified) value of x, observed Fraction(values

observedCumDist

Num(total values) (see argument observedCumDist)

numTotalCounts

number of standard errors to go in each direction from theoretical quantity to see if the estimate falls into the confidence interval

numSEsToCheck

error message to return if observed fraction falls outside of confidence interval

errorMessage


Function to test quantile equality for theoretical and observed distributions


The package implements MBASED algorithm for detecting
allele-specific gene expression from RNA count data, where
allele counts at individual loci (SNVs) are integrated into a
gene-specific measure of ASE, and utilizes simulations to
appropriately assess the statistical significance of observed
ASE.

Oleg Mayba

MBASED

Package containing functions for ASE analysis using
Meta-analysis Based Allele-Specific Expression Detection

testQuantiles function

for (unspecified) value of x, observed Fraction(values<=x) = Num(values<=x)/Num(total values). Actual values of x must be the same as those for corresponding entries in theoreticalCumDist

Function to test quantile equality for theoretical and observed distributions

testQuantiles: Function to test quantile equality for theoretical and observed distributions

Description

Usage

Arguments

Value

Details

See Also