testgenotypes

Contains alleles of 20 Rubus samples at three microsatellite loci.

datasets

polysat is a collection of tools to handle microsatellite
        data of any ploidy (and samples of mixed ploidy) where allele
        copy number is not known in partially heterozygous genotypes.
        It can import and export data in ABI GeneMapper, Structure,
        ATetra, Tetrasat/Tetra, GenoDive, SPAGeDi, and binary
        presence/absence formats.  It can calculate pairwise
        differences between individuals using a stepwise mutation model
        or infinite alleles model. It can assist the user in estimating
        the ploidy of samples, and lastly it can estimate allele
        frequencies in populations and calculate pairwise Fst values
        based on those frequencies.

Lindsay V Clark

polysat

Tools for Polyploid Microsatellite Analysis

testgenotypes function

A two-dimensional list of integer vectors.  Samples are the
  first dimension of the list and loci the second dimension.  Each
  vector contains all alleles for a given sample and locus.

testgenotypes: Rubus Genotype Data for Learning polysat

Description

Usage

Arguments

format

source

See Also