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genepop (version 1.2.11)

Population Genetic Data Analysis Using Genepop

Description

Makes the Genepop software available in R. This software implements a mixture of traditional population genetic methods and some more focused developments: it computes exact tests for Hardy-Weinberg equilibrium, for population differentiation and for genotypic disequilibrium among pairs of loci; it computes estimates of F-statistics, null allele frequencies, allele size-based statistics for microsatellites, etc.; and it performs analyses of isolation by distance from pairwise comparisons of individuals or population samples.

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Version

Install

install.packages('genepop')

Monthly Downloads

485

Version

1.2.11

License

CeCILL-2

Maintainer

Franois Rousset

Last Published

August 27th, 2025

Functions in genepop (1.2.11)

genepop-package

Population genetic analyses using the Genepop software
nulls

Estimation of allele frequencies under genotyping failure.
manipulation

Various data manipulation utilities
setRandomSeed

Set random generator seed (except for Mantel test)
set_restriction

Programming utilities
genepopExample

Copy an example file from the Genepop package distribution
conversion

File conversions
genepop-internals

Internal genepop Functions
genedivFis

Gene diversities and Fis (or rho_IS)
clean_workdir

Removing files created by Genepop
Contingency-test

Exact test on a single contingency table
Hardy-Weinberg

Tests of Hardy-Weinberg genotypic proportions
basic_info

Allele and genotype frequencies
Differentiation

Tests of genic and genotypic differentiation
GUI

Call an experimental GUI for Genepop
Nm_private

Private allele method
IBD

Isolation by distance
Fst

Fst (or rho_ST) estimation
Linkage

Tables and exact test for genotypic linkage disequilibrium
setMantelSeed

Set random generator seed for Mantel test