threshDIC

tree

a named vector containing discrete character states; or a matrix containing the tip species, in rows, and probabilities of being in each state, in columns.

list object returned by <code><a href="/link/ancThresh?package=phytools&version=0.2-40" rd-options="" data-mini-rdoc="phytools::ancThresh">ancThresh</a></code>.

mcmc

number of generations (not samples) to exclude as burn in; if not supplied then 20 percent of generations are excluded.

burnin

assumed ordering of the discrete character state. If not supplied and <code>x</code> is a vector then numerical-alphabetical order is assumed; if not supplied and <code>x</code> is a matrix, then the column order of <code>x</code> is used.

sequence

method for computing the effective number of parameters (options are <code>"pD"</code> and <code>"pV"</code>).

method

This function computes the Deviance Information Criterion from the MCMC object returned by <code><a href="/link/ancThresh?package=phytools&version=0.2-40" rd-options="" data-mini-rdoc="phytools::ancThresh">ancThresh</a></code>.

phylogenetics

comparative method

Bayesian

phytools provides various functions for phylogenetic
        analysis, mostly relevant to comparative biology.

threshDIC: Deviance Information Criterion from the threshold model

Description

Usage

Arguments

Value

See Also