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adephylo (version 1.1-13)

Exploratory Analyses for the Phylogenetic Comparative Method

Description

Multivariate tools to analyze comparative data, i.e. a phylogeny and some traits measured for each taxa.

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Version

Install

install.packages('adephylo')

Monthly Downloads

6,325

Version

1.1-13

License

GPL (>= 2)

Maintainer

Stéphane Dray

Last Published

October 19th, 2022

Functions in adephylo (1.1-13)

adephylo-package

The adephylo package

abouheif.moran

Abouheif's test based on Moran's I

listTips

List tips descendings from all nodes of a tree

dibas

DIstance-Based Assignment

listDD

List direct descendants for all nodes of a tree

carni19

Phylogeny and quantative trait of carnivora

carni70

Phylogeny and quantitative traits of carnivora

bullseye

Fan-like phylogeny with possible representation of traits on tips

distTips

Compute some phylogenetic distance between tips

distRoot

Compute the distance of tips to the root

ppca

Phylogenetic principal component analysis

orthogram

Orthonormal decomposition of variance

.tipToRoot

Low-level auxiliary functions for adephylo

moran.idx

Computes Moran's index for a variable

mjrochet

Phylogeny and quantitative traits of teleos fishes

orthobasis.phylo

Computes Moran's eigenvectors from a tree or a phylogenetic proximity matrix

maples

Phylogeny and quantitative traits of flowers

procella

Phylogeny and quantitative traits of birds

palm

Phylogenetic and quantitative traits of amazonian palm trees

lizards

Phylogeny and quantitative traits of lizards

tithonia

Phylogeny and quantitative traits of flowers

ungulates

Phylogeny and quantitative traits of ungulates.

proxTips

Compute some phylogenetic proximities between tips

treePart

Define partitions of tips according from a tree

sp.tips

Find the shortest path between tips of a tree

table.phylo4d

Graphical display of phylogeny and traits