traceplot

Displays a plot of iterations vs. sampled values for each variable
in the chain, with a separate plot per variable.

hplot

Provides functions for summarizing and plotting the
output from Markov Chain Monte Carlo (MCMC) simulations, as
well as diagnostic tests of convergence to the equilibrium
distribution of the Markov chain.

Martyn Plummer

coda

Output Analysis and Diagnostics for MCMC

Nicky Best

Kate Cowles

Karen Vines

Deepayan Sarkar

Douglas Bates

Russell Almond

Arni Magnusson

traceplot function

<dl> <dt>x</dt>
<dd>An <code>mcmc</code> or <code>mcmc.list</code> object</dd> <dt>smooth</dt>
<dd>draw smooth line through trace plot</dd> <dt>col</dt>
<dd>graphical parameter (see <code>par</code>)</dd> <dt>type</dt>
<dd>graphical parameter (see <code>plot</code>)</dd> <dt>xlab</dt>
<dd>graphical parameter (see <code>plot</code>)</dd> <dt>ylab</dt>
<dd>graphical parameter (see <code>plot</code>)</dd> <dt>...</dt>
<dd>further graphical parameters</dd></dl>

Arguments

Trace plot of MCMC output — traceplot

<dl>

 <dt>x</dt>
<dd>An <code>mcmc</code> or <code>mcmc.list</code> object</dd>

 <dt>smooth</dt>
<dd>draw smooth line through trace plot</dd>

 <dt>col</dt>
<dd>graphical parameter (see <code>par</code>)</dd>

 <dt>type</dt>
<dd>graphical parameter (see <code>plot</code>)</dd>

 <dt>xlab</dt>
<dd>graphical parameter (see <code>plot</code>)</dd>

 <dt>ylab</dt>
<dd>graphical parameter (see <code>plot</code>)</dd>

 <dt>...</dt>
<dd>further graphical parameters</dd>

</dl>

Trace plot of MCMC output

traceplot: Trace plot of MCMC output

Description

Usage

Arguments

See Also