Rgb (version 1.6.1)

track.genes-class: Class "track.genes"

Description

This class is a variation of the '>track.table class dedicated to genes, enforcing new drawing parameter defaults and a few specialized methods.

Objects can be created by two distincts means :

• Using the corresponding constructors, which work like the track.table constructor.

• Importing a '>track.table object in an empty object created by a call to new (see Examples).

Extends

Class '>track.table, directly. Class '>refTable, by class '>track.table, distance 2. Class '>crossable, by class '>track.table, distance 2. Class '>sliceable, by class '>track.table, distance 3. Class '>drawable, by class '>track.table, distance 4.

All reference classes extend and inherit methods from '>envRefClass.

Fields

The following fields are inherited (from the corresponding class):

• assembly ('>track.table)

• checktrack ('>track.table)

• colCount ('>refTable)

• colIterator ('>refTable)

• colNames ('>refTable)

• colReferences ('>refTable)

• index ('>track.table)

• name ('>drawable)

• organism ('>track.table)

• parameters ('>drawable)

• rowCount ('>refTable)

• rowNamed ('>refTable)

• rowNames ('>refTable)

• sizetrack ('>track.table)

• subtrack ('>track.table)

• values ('>refTable)

Methods

The following methods are inherited (from the corresponding class):

• addArms ('>track.table)

• addColumn ('>track.table)

• addDataFrame ('>refTable)

• addEmptyRows ('>refTable)

• addList ('>track.table)

• addVectors ('>refTable)

• buildCalls ('>track.table)

• buildGroupPosition ('>track.table)

• buildGroupSize ('>track.table)

• buildIndex ('>track.table)

• callParams ('>drawable)

• callSuper ('>envRefClass)

• check ('>track.table)

• chromosomes ('>track.table)

• coerce ('>track.table)

• colOrder ('>refTable)

• copy ('>refTable)

• cross ('>crossable)

• defaultParams ('>track.table)

• delColumns ('>track.table)

• draw ('>sliceable)

• erase ('>refTable)

• eraseArms ('>track.table)

• export ('>envRefClass)

• extract ('>refTable)

• field ('>envRefClass)

• fill ('>track.table)

• fix.param ('>drawable)

• getChromEnd ('>track.table)

• getClass ('>envRefClass)

• getColCount ('>refTable)

• getColNames ('>refTable)

• getLevels ('>refTable)

• getName ('>drawable)

• getParam ('>drawable)

• getRefClass ('>envRefClass)

• getRowCount ('>refTable)

• getRowNames ('>refTable)

• import ('>envRefClass)

• indexes ('>refTable)

• initFields ('>envRefClass)

• initialize ('>track.table)

• isArmed ('>track.table)

• metaFields ('>track.table)

• rowOrder ('>track.table)

• segMerge ('>track.table)

• segOverlap ('>track.table)

• setColNames ('>track.table)

• setLevels ('>track.table)

• setName ('>drawable)

• setParam ('>drawable)

• setRowNames ('>refTable)

• show ('>track.table, overloaded)

• size ('>track.table)

• slice ('>track.table)

• trace ('>envRefClass)

• types ('>refTable)

• untrace ('>envRefClass)

• usingMethods ('>envRefClass)

See Also

track.table-class, track.table, track.table.GTF

track.genes, track.genes.NCBI