trackViewerStyle-class

trackViewerStyle

setTrackViewerStyleParam

setTrackViewerStyleParam,trackViewerStyle,character-method

setTrackViewerStyleParam,trackViewerStyle,character,ANY-method

An object of <code>trackViewerStyle</code>.

attr

value


  An object of class <code>"trackViewerStyle"</code> represents track viewer style.


classes

Visualize mapped reads along with annotation as track layers for NGS dataset
such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq, SNPs and methylation data.

Jianhong Ou

trackViewer

A bioconductor package with minimalist design for drawing elegant tracks or lollipop plot

trackViewerStyle-class function

Objects can be created by calls of the form 
  <code>new("trackViewerStyle", margin, xlas, 
                                xgp, xaxis, autolas, flip)</code>. 

Objects from the Class

trackViewerStyle(...): Each argument in ... becomes an slot in the new 
  trackViewerStyle.

constructor

<dl>
    <dt><code>margin</code></dt><dd><code>"numeric"</code>, specify the bottom, left, top and right
    margin.</dd> <dt><code>xlas</code></dt><dd><code>"numeric"</code>, label direction of x-axis mark. It should 
    be a integer 0-3. See <code><a rd-options="graphics" href="/link/par?package=trackViewer&version=1.8.4&to=graphics" data-mini-rdoc="graphics::par">par</a>:las</code></dd> <dt><code>xgp</code></dt><dd>A <code>"list"</code> object, It will convert to an object of 
    class <code><a rd-options="grid" href="/link/gpar?package=trackViewer&version=1.8.4&to=grid" data-mini-rdoc="grid::gpar">gpar</a></code>. This is basically a list of graphical 
    parameter settings of x-axis. For y-axis, see <code><a rd-options="" href="/link/yaxisStyle?package=trackViewer&version=1.8.4" data-mini-rdoc="trackViewer::yaxisStyle">yaxisStyle</a></code></dd> <dt><code>xaxis</code></dt><dd><code>"logical"</code>, draw x-axis or not</dd> <dt><code>autolas</code></dt><dd><code>"logical"</code> automatic determine y label direction</dd> <dt><code>flip</code></dt><dd><code>"logical"</code> flip the x-axis or not, default FALSE</dd> </dl> 

Slots

<dl>
        <dt>setTrackViewerStyleParam</dt><dd>change the slot values of an object of 
            <code>trackViewerStyle</code></dd> </dl> 

trackViewerStyle-class: Class `"trackViewerStyle"`

Description

Usage

Arguments

Objects from the Class

constructor

Slots

Methods

Examples