write.nexus(phy, file = "", translate = TRUE, original.data = TRUE)
"phylo"
.file = ""
(the default) then the
tree is written on the standard output connection.TRUE
(the default) a translation
of the tip labels is done which are replaced in the parenthetic
representation with tokens.TRUE
(the default) the
data in the original NEXUS file are eventually written in
"file"
(see below).original.data = TRUE
, the file as specified by the attribute
"origin"
of phy
is read and its data (except the trees)
are written in file
.
Currently, only a single tree can be written in file
.read.nexus
, read.tree
,
write.tree