write.nexus(..., file = "", translate = TRUE, original.data = TRUE)
"phylo"
, (ii) a
series of such objects separated by commas, or (iii) a list
containing such objects.file = ""
(the default) then the
tree is written on the standard output connection.TRUE
(the default) a translation
of the tip labels is done which are replaced in the parenthetic
representation with tokens.TRUE
(the default) the
data in the original NEXUS file are eventually written in
"file"
(see below).original.data = TRUE
, the file as specified by the attribute
"origin"
of the first tree is read and its data (except the
trees) are written in file
.If several trees are given, they must have all the same tip labels.
If among the objects given some are not trees of class "phylo"
,
they are simply skipped and not written to the file.
read.nexus
, read.tree
,
write.tree
, read.nexus.data
,
write.nexus.data