Usage
write.table(x, file = "", append = FALSE, quote = TRUE, sep = " ", eol = "\n", na = "NA", dec = ".", row.names = TRUE, col.names = TRUE, qmethod = c("escape", "double"), fileEncoding = "")
"write.table"(x, file="", append = FALSE, quote = 7, sep = "\t", eol = "\n", na = "NA", dec = ".", row.names = TRUE, col.names=c("Status", "Chromosome", "Start", "End", "Average KC score", "Mode KC score", "Probes"), qmethod = c("escape", "double"))
"write.table"(x, file="", append = FALSE, quote = 7, sep = "\t", eol = "\n", na = "NA", dec = ".", row.names = FALSE, col.names=c("startrow", "endrow", "chromosome", "startposition", "endposition"), qmethod = c("escape", "double"))
Arguments
x
The sigSegments object to be summarized
file
either a character string naming a file or a connection open
for writing. '""' indicates output to the console.
append
logical. Only relevant if 'file' is a character string. If
'TRUE', the output is appended to the file. If 'FALSE', any
existing file of the name is destroyed.
quote
a logical value ('TRUE' or 'FALSE') or a numeric vector. If
'TRUE', any character or factor columns will be surrounded by
double quotes. If a numeric vector, its elements are taken
as the indices of columns to quote. In both cases, row and
column names are quoted if they are written. If 'FALSE',
nothing is quoted.
sep
the field separator string. Values within each row of 'x'
are separated by this string.
eol
the character(s) to print at the end of each line (row).
na
the string to use for missing values in the data.
dec
the string to use for decimal points in numeric or complex
columns: must be a single character.
row.names
either a logical value indicating whether the row names of
'x' are to be written along with 'x', or a character vector
of row names to be written.
col.names
either a logical value indicating whether the column names
of 'x' are to be written along with 'x', or a character
vector of column names to be written. See the section on
'CSV files' for the meaning of 'col.names = NA'.
qmethod
a character string specifying how to deal with embedded
double quote characters when quoting strings. Must be one of
'"escape"' (default), in which case the quote character is
escaped in C style by a backslash, or '"double"', in which
case it is doubled. You can specify just the initial letter.
fileEncoding
character string: if non-empty declares the
encoding to be used on a file (not a connection) so the character data can
be re-encoded as they are written. See file.