SeqGSEA (version 1.12.0)

writeScores: Write DE/DS scores and gene scores

Description

This function is to write DE and DS scores, and optionally gene scores.

Usage

writeScores(DEscore, DSscore, geneScore=NULL, geneScoreAttr=NULL, file="")

Arguments

DEscore

normalized DE scores.

DSscore

normalized DS scores.

geneScore

gene scores integrated from DE and DS scores.

geneScoreAttr

the parameters for integrating DE and DS scores.

file

output file name, if not specified print to screen.

See Also

DEscore, geneScore

Examples

data(DEscore, package="SeqGSEA")
data(DSscore, package="SeqGSEA")
gene.score <- geneScore(DEscore, DSscore, method="linear", DEweight = 0.3)
writeScores(DEscore, DSscore) # without gene scores
writeScores(DEscore, DSscore, geneScore = gene.score, 
            geneScoreAttr = "linear,0.3") # gene scores with attr.