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spdep (version 0.7-9)

Spatial Dependence: Weighting Schemes, Statistics and Models

Description

A collection of functions to create spatial weights matrix objects from polygon 'contiguities', from point patterns by distance and tessellations, for summarizing these objects, and for permitting their use in spatial data analysis, including regional aggregation by minimum spanning tree; a collection of tests for spatial 'autocorrelation', including global 'Morans I', 'APLE', 'Gearys C', 'Hubert/Mantel' general cross product statistic, Empirical Bayes estimates and 'Assuno/Reis' Index, 'Getis/Ord' G and multicoloured join count statistics, local 'Moran's I' and 'Getis/Ord' G, 'saddlepoint' approximations, exact tests for global and local 'Moran's I' and 'LOSH' local indicators of spatial heteroscedasticity; and functions for estimating spatial simultaneous 'autoregressive' ('SAR') lag and error models, impact measures for lag models, weighted and 'unweighted' 'SAR' and 'CAR' spatial regression models, semi-parametric and Moran 'eigenvector' spatial filtering, 'GM SAR' error models, and generalized spatial two stage least squares models.

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Install

install.packages('spdep')

Monthly Downloads

41,220

Version

0.7-9

License

GPL (>= 2)

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Maintainer

Roger Bivand

Last Published

September 28th, 2018

Functions in spdep (0.7-9)

ME

Moran eigenvector GLM filtering
anova.sarlm

Comparison of simultaneous autoregressive models
SpatialFiltering

Semi-parametric spatial filtering
autocov_dist

Distance-weighted autocovariate
as_dgRMatrix_listw

Interface between Matrix class objects and weights lists
joincount.test

BB join count statistic for k-coloured factors
diffnb

Differences between neighbours lists
geary

Compute Geary's C
Graph Components

Depth First Search on Neighbor Lists
errorsarlm

Spatial simultaneous autoregressive error model estimation
knearneigh

K nearest neighbours for spatial weights
aple

Approximate profile-likelihood estimator (APLE)
aple.mc

Approximate profile-likelihood estimator (APLE) permutation test
MCMCsamp

MCMC sample from fitted spatial regression
choynowski

Choynowski probability map values
columbus

Columbus OH spatial analysis data set
eigenw

Spatial weights matrix eigenvalues
lee

Compute Lee's statistic
aple.plot

Approximate profile-likelihood estimator (APLE) scatterplot
aggregate.nb

Aggregate a spatial neighbours object
knn2nb

Neighbours list from knn object
lee.mc

Permutation test for Lee's L statistic
card

Cardinalities for neighbours lists
airdist

Measure distance from plot
eire

Eire data sets
dnearneigh

Neighbourhood contiguity by distance
cell2nb

Generate neighbours list for grid cells
geary.mc

Permutation test for Geary's C statistic
bhicv

Data set with 4 life condition indices of Belo Horizonte region
lm.morantest.sad

Saddlepoint approximation of global Moran's I test
bptest.sarlm

Breusch-Pagan test for spatial models
localG

G and Gstar local spatial statistics
lag.listw

Spatial lag of a numeric vector
geary.test

Geary's C test for spatial autocorrelation
lagmess

Matrix exponential spatial lag model
do_ldet

Spatial regression model Jacobian computations
lagsarlm

Spatial simultaneous autoregressive lag model estimation
globalG.test

Global G test for spatial autocorrelation
graphneigh

Graph based spatial weights
moran

Compute Moran's I
gstsls

Spatial simultaneous autoregressive SAC model estimation by GMM
nb2WB

Output spatial weights for WinBUGS
impacts

Impacts in spatial lag models
listw2sn

Spatial neighbour sparse representation
nb2blocknb

Block up neighbour list for location-less observations
moran.mc

Permutation test for Moran's I statistic
droplinks

Drop links in a neighbours list
nb2mat

Spatial weights matrices for neighbours lists
skater

Spatial 'K'luster Analysis by Tree Edge Removal
joincount.mc

Permutation test for same colour join count statistics
nbcosts

Compute cost of edges
lm.LMtests

Lagrange Multiplier diagnostics for spatial dependence in linear models
joincount.multi

BB, BW and Jtot join count statistic for k-coloured factors
prunecost

Compute cost of prune each edge
edit.nb

Interactive editing of neighbours lists
moran.plot

Moran scatterplot
localmoran.exact

Exact local Moran's Ii tests
localmoran

Local Moran's I statistic
nbdists

Spatial link distance measures
sp.correlogram

Spatial correlogram
include.self

Include self in neighbours list
nblag

Higher order neighbours lists
lm.morantest

Moran's I test for residual spatial autocorrelation
lm.morantest.exact

Exact global Moran's I test
invIrM

Compute SAR generating operator
moran.test

Moran's I test for spatial autocorrelation
lee.test

Lee's L test for spatial autocorrelation
prunemst

Prune a Minimun Spanning Tree
predict.sarlm

Prediction for spatial simultaneous autoregressive linear model objects
probmap

Probability mapping for rates
read.gal

Read a GAL lattice file into a neighbours list
plot.mst

Plot the Minimum Spanning Tree
spdep

Return package version number
ssw

Compute the sum of dissimilarity
nb2lines

Use arc-type shapefiles for import and export of weights
read.gwt2nb

Read and write spatial neighbour files
lextrB

Find extreme eigenvalues of binary symmetric spatial weights
stsls

Generalized spatial two stage least squares
localmoran.sad

Saddlepoint approximation of local Moran's Ii tests
mat2listw

Convert a square spatial weights matrix to a weights list object
spweights.constants

Provides constants for spatial weights matrices
nb2listw

Spatial weights for neighbours lists
nb.set.operations

Set operations on neighborhood objects
plot.nb

Plot a neighbours list
p.adjustSP

Adjust local association measures' p-values
nb2INLA

Output spatial neighbours for INLA
mstree

Find the minimal spanning tree
plot.skater

Plot the object of skater class
is.symmetric.nb

Test a neighbours list for symmetry
tolerance.nb

Function to construct edges based on a tolerance angle and a maximum distance
sp.mantel.mc

Mantel-Hubert spatial general cross product statistic
set.spChkOption

Control checking of spatial object IDs
trW

Spatial weights matrix powers traces
similar.listw

Create symmetric similar weights lists
tri2nb

Neighbours list from tri object
spautolm

Spatial conditional and simultaneous autoregression model estimation
sacsarlm

Spatial simultaneous autoregressive SAC model estimation
write.nb.gal

Write a neighbours list as a GAL lattice file
poly2nb

Construct neighbours list from polygon list
set.mcOption

Options for parallel support
residuals.sarlm

Access functions for spatial simultaneous autoregressive linear model objects
Rotation

Rotate a set of point by a certain angle
summary.nb

Print and summary function for neighbours and weights lists
summary.sarlm

summary method for class sarlm
subset.listw

Subset a spatial weights list
subset.nb

Subset a neighbours list
oldcol

Columbus OH spatial analysis data set - old numbering
EBest

Global Empirical Bayes estimator
LR.sarlm

Likelihood ratio test
LOSH

Local spatial heteroscedasticity
LOSH.cs

Chi-square based test for local spatial heteroscedasticity
EBlocal

Local Empirical Bayes estimator
EBImoran.mc

Permutation test for empirical Bayes index
GMerrorsar

Spatial simultaneous autoregressive error model estimation by GMM
LOSH.mc

Bootstrapping-based test for local spatial heteroscedasticity