xmcmc
L |
likelihood components: CAc (commercial catch at
age), CAs (survey catch at age), Survey (survey
abundance index), Prior (penalty for priors), Total
(sum of all likelihood components; the objective function). |
P |
estimated parameters: R0 (average virgin
recruitment), Rinit (initial recruitment scaler),
uinit (initial harvest rate), cSleft (left-side slope
of commercial selectivity curve), cSfull (age at full
commercial selectivity), sSleft (left-side slope of survey
selectivity curve), sSfull (age at full survey selectivity),
logq (log-transformed survey catchability). |
B |
predicted biomass (age 4+) by year. |
R |
predicted recruitment by year. |
x.cod
help page for details about the data and
model.
importMCMC
was used to import the MCMC results. xmcmc
and xproj
are MCMC results and projections
for the x.cod
model run.
scape-package
gives an overview of the package.
# See examples in package 'plotMCMC'
Run the code above in your browser using DataLab