Xpose expects, by default, to find at least one the the following NONMEM
tables in the working directory to be able to create an Xpose data object
(using a run number of '5' as an example):
sdtab5: The 'standard' parameters, including IWRE, IPRE, TIME, and the NONMEM
default items (DV, PRED, RES and WRES) that are added when NOAPPEND is not
present in the $TABLE
record.
$TABLE ID TIME IPRE IWRE NOPRINT ONEHEADER FILE=sdtab5
patab5: The empirical Bayes estimates of individual model parameter values,
or posthoc estimates. These are model parameters, such as CL, V2, ETA1, etc.
$TABLE ID CL V2 KA K F1 ETA1 ETA2 ETA3 NOPRINT NOAPPEND ONEHEADER
FILE=patab5
catab5: Categorical covariates, e.g. SEX, RACE.
$TABLE ID SEX HIV GRP NOPRINT NOAPPEND ONEHEADER FILE=catab5
cotab5: Continuous covariates, e.g. WT, AGE.
$TABLE ID WT AGE BSA HT GGT HB NOPRINT NOAPPEND ONEHEADER FILE=cotab5
mutab5, mytab5, extra5, xptab5: Additional variables of any kind. These might
be useful if there are more covariates than can be accommodated in the
covariates tables, for example, or if you have other variables that should be
added, e.g. CMAX, AUC.
The default names for table files can be changed by changing the default
values to the function. The files that Xpose looks for by default are:
paste(table.names, runno, tab.suffix, sep="")
The default CWRES table file name is called:
paste(cwres.name,runno,cwres.suffix,tab.suffix,sep="")
If there are simulation files present then Xpose looks for the files to be
named:
paste(table.names, runno, sim.suffix, tab.suffix, sep="")
paste(cwres.name,runno,sim.suffix,cwres.suffix,tab.suffix,sep="")
This is basically a wrapper function for the read.nm.tables
,
Data
and SData
functions. See them for further information.
Also reads in the .phi file associated with the run (Individual OFVs,
parameters, and variances of those parameters.)