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R2MLwiN (version 0.8-6)

Running 'MLwiN' from Within R

Description

An R command interface to the 'MLwiN' multilevel modelling software package.

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Version

Install

install.packages('R2MLwiN')

Monthly Downloads

285

Version

0.8-6

License

GPL (>= 2)

Maintainer

Zhengzheng Zhang

Last Published

May 26th, 2019

Functions in R2MLwiN (0.8-6)

Formula.translate.compat

An internal function, allowing back-compatibility, which translates a model formula from a formula object or character string into an R list object.
MCSE

Calculates the estimated Monte Carlo standard error (MCSE)
df.residual,mlwinfitIGLS-method

Returns the residual degrees-of-freedom extracted from "mlwinfitIGLS" objects.
formula,mlwinfitMCMC-method

"mlwinfitMCMC" model formula
deviance,mlwinfitIGLS-method

Returns the deviance from "mlwinfitIGLS" objects.
gcsecomp1

Pupils' marks from GCSE exams (UK, 1989); complete cases only.
BD

Calculates Brooks-Draper diagnostic
getSummary,mlwinfitMCMC-method

Extract coefficients and GOF measures from a statistical object (memisc package).
R2MLwiN

Running MLwiN from within R
Untoggle

Converts a categorical variable into several separate binary variables
Formula.translate

An internal function to translate an R formula into an R list object.
predict,mlwinfitMCMC-method

Returns the predicted data from "mlwinfitMCMC" objects.
height

Height data.
bang1

Sub-sample from the 1989 Bangladesh Fertility Survey
prior2macro

Translates informative prior information into a concise MLwiN macro.
trajectories

Plots MCMC chain trajectories
tutorial

Exam results for six inner London Education Authorities
wage1

Simulated dataset of office workers' salary and other employment details.
bes83

Subsample from British Election Study, '83.
caterpillar

Draws a caterpillar plot (in MLwiN style).
formula,mlwinfitIGLS-method

"mlwinfitIGLS" model formula
write.IGLS

Writes MLwiN macros to fit models using the iterative generalized least squares (IGLS) algorithm.
df2matrix

Translates a data.frame, formatted for use in multiple membership modelling in MLwiN, to a matrix.
fitted,mlwinfitMCMC-method

Returns the fitted values from "mlwinfitMCMC" objects.
diag1

Examination dataset
caterpillarR

Draws caterpillar plots of the residuals from a mlwinfitIGLS-class or mlwinfitMCMC-class object, at a chosen level of the multilevel model.
mlwinfitIGLS-class

An S4 class that stores the outputs of the fitted IGLS model.
extract,mlwinfitMCMC-method

Extract coefficients and GOF measures from a statistical object.
coef,mlwinfitIGLS-method

Extract the coefficient vector from "mlwinfitIGLS" objects
fitted,mlwinfitIGLS-method

Returns the fitted values from "mlwinfitIGLS" objects.
coef,mlwinfitMCMC-method

Extract the coefficient vector from "mlwinfitMCMC" objects
nobs,mlwinfitMCMC-method

Returns the number of used observations from "mlwinfitMCMC" objects.
mlwinfitMCMC-class

An S4 class that stores the outputs of the fitted MCMC model.
[,mlwinfitMCMC,ANY,ANY,ANY-method

Extract or Replace parts of "mlwinfitMCMC" objects
extract,mlwinfitIGLS-method

Extract coefficients and GOF measures from a statistical object (texreg package).
predCurves

Draws predicted curves (lines) using estimates from the fixed part of a fitted model.
summary,mlwinfitIGLS-method

Summarize "mlwinfitIGLS" objects
summary,mlwinfitMCMC-method

Summarize "mlwinfitMCMC" objects
vcov,mlwinfitIGLS-method

Extract the approximate variance-covariance matrix from "mlwinfitIGLS" objects
matrix2df

For multiple membership models, translates matrix into a data.frame formatted for MLwiN Translates a matrix into a form usable by MLwiN for multiple membership models, namely a data.frame with (a) columns containing membership IDs (if first row matrix is 0 1 1 0 1 1, then first row of generated ID vectors would be, say, 2, 3, 5, 6) and (b) columns containing weights (in this example, if standardise = TRUE, then first row of generated weight vectors would be, say, 0.25, 0.25, 0.25, 0.25, otherwise first row of generated weight vectors would be, say, 1, 1, 1, 1).
jspmix1

Dataset of pupils' test scores, a subset of the Junior School Project.
hungary1

Hungarian component of 2nd International Science Survey, '84; see Goldstein 2003
predLines

Draws predicted lines using a fitted model object
predict,mlwinfitIGLS-method

Returns the predicted data from "mlwinfitIGLS" objects.
vcov,mlwinfitMCMC-method

Extract the approximate variance-covariance matrix from "mlwinfitMCMC" objects
update,mlwinfitIGLS-method

Update "mlwinfitIGLS" objects
mlwin2bugs

This function captures output files from MLwiN for estimation in WinBUGS/OpenBUGS.
update,mlwinfitMCMC-method

Update "mlwinfitMCMC" objects
rats

Weights of 30 rats, measured weekly over 5 weeks.
bang

Sub-sample from the 1989 Bangladesh Fertility Survey (see Huq & Cleveland, 1990)
alevchem

Chemistry A-level results from one exam board
reading1

Students' reading attainment in inner London infant schools.
double2singlePrecision

Converts numerical values from double precision to single precision.
residuals,mlwinfitIGLS-method

Returns the residual data from "mlwinfitIGLS" objects.
residuals,mlwinfitMCMC-method

Returns the residual data from "mlwinfitMCMC" objects.
[,mlwinfitIGLS,ANY,ANY,ANY-method

Extract or Replace parts of "mlwinfitIGLS" objects
xc

Examination scores of 16-year olds in Fife, Scotland.
xc1

Examination scores of 16-year olds in Fife, Scotland.
gcsemv1

Pupils' marks from GCSE exams (UK, 1989).
getSummary,mlwinfitIGLS-method

Extract coefficients and GOF measures from a statistical object (memisc package).
logLik,mlwinfitIGLS-method

Returns the log-likelihood from "mlwinfitIGLS" objects.
nobs,mlwinfitIGLS-method

Returns the number of used observations from "mlwinfitIGLS" objects.
lips1

Lips data
mmmec

EC data on UV radiation exposure & malignant melanoma.
runMLwiN

Calls MLwiN from R.
sixway

Draws a sixway plot of MCMC diagnostics.
write.MCMC

Writes MLwiN macros to fit models using Markov chain Monte Carlo (MCMC) methods
ws2foreign

Converts data from one format to another within MLwiN