Usage
plotCompareGenos(genos_1 = "genotypes_1", genos_2 = "genotypes_2", markerToPlot = "all", individualsToPlot = "all", chromToPlot = "all", CompColors = c("#000000", "#E69F00"), textSize = 12, showMarkerNames = FALSE, showIndividualNames = FALSE)
Arguments
genos_1
Output of readABHgenotypes
genos_2
Output of readABHgenotypes. Note that both genos object need to
have identical numbers of marker x individuals.
markerToPlot
A character vector of marker names which appear in the
plot. Defaults to all.
individualsToPlot
A character vector of individual names which appear
in the plot. Defaults to all.
chromToPlot
A character vector of chromosome names which appear in the
plot. Defaults to all.
CompColors
A character vector of length 2 giving the color names or
values to use for differnt and identical markers.
Defaults to black and orange.
textSize
The size of all text elements in the plot. Useful for making a
nice plot. Defaults to 12.
showMarkerNames
Show the marker names along the x axis. This and
showIndividualnames are useful when you display only a few markers and
want them labeled. Defaults to FALSE.
showIndividualNames
Show individual names along the y axis.