ABSSeq (version 1.2.0)

calPara: Calculate parameters for generalized Poisson test (GPTest)

Description

Calculate a set of parameters from normalized counts table before GPTest

Usage

calPara(object)

Arguments

object

an ABSDataSet object.

Value

log2 of foldchange and mean of each group, named as 'absD', 'baseMean', 'Amean', 'Bmean', 'Variance' and 'foldChange', respectively. Use the results to get access it

Examples

obj <- ABSDataSet(counts=simuN5$counts, groups=factor(simuN5$groups))
obj <- normalFactors(obj)
obj <- calPara(obj)
plotDifftoBase(obj)