ACEt (version 1.9.0)

test_acetp: Hypothesis testing of the ACE(t)-p models

Description

Comparison of different ACE(t)-p models to test a linear or a constant variance component.

Usage

test_acetp(acetp, comp, sim = 100, robust = 0, pe = TRUE, verbose = TRUE)

Value

p

The p-value for the test.

llr

The LRT statistic for testing linearity.

llr_sim

The simulated null distribution of the LRT statistic for testing linearity.

chisq

The chisq statistic for testing a constant or linearity.

Arguments

acetp

An object from the AtCtEtp function.

comp

The component for which linearity or constancy is tested. This component must be specified as splines or linear in the AtCtEtp function.

sim

The number of the bootstrap resampling for approximating the null distribution when testing linearity.

robust

An integer indicating the number of different initial values that the function will randomly generate and try in the optimization. The default value is 0.

pe

A logical argument indicating whether to use penalized spline model to test linearity. The default value is TRUE.

verbose

A logical argument indicating whether to print testing information and results. The default value is TRUE.

Author

Liang He

Details

When pe=TRUE, the linearity is tested under a p-spline framework in which an LRT is performed. Otherwise, a \(\chi^2\) test is performed for linearity under a spline framework without penalty on smoothness.

References

He, L., Sillanpää, M.J., Silventoinen, K., Kaprio, J. and Pitkäniemi, J., 2016. Estimating Modifying Effect of Age on Genetic and Environmental Variance Components in Twin Models. Genetics, 202(4), pp.1313-1328.

He, L., Pitkäniemi, J., Silventoinen, K. and Sillanpää, M.J., 2017. ACEt: An R package for estimating dynamic heritability and comparing twin models. Behavior Genetics, 47(6), pp.620-641.

Examples

# data(data_ace)

# result <- AtCtEtp(data_ace$mz, data_ace$dz, knot_e = 7, knot_c = 5, mod=c('d','d','l'))
# re <- test_acetp(result, comp='e')