ADAPTS (version 0.9.21)

clustWspillOver: Build clusters based on n-pass spillover matrix

Description

Build clusters based on n-pass spillover matrix

Usage

clustWspillOver(sigMatrix, geneExpr, nPasses = 100,
  deconMatrices = NULL)

Arguments

sigMatrix

The deconvolution matrix, e.g. LM22 or MGSM27

geneExpr

The source gene expression matrix used to calculate sigMatrix.

nPasses

The maximum number of iterations for spillToConvergence (DEFAULT: 100)

deconMatrices

Optional pre-computed results from spillToConvergence (DEFAULT: NULL)

Value

Cell types grouped by cluster

Examples

# NOT RUN {
#This toy example 
library(ADAPTS)
fullLM22 <- ADAPTS::LM22[1:30, 1:4]
smallLM22 <- fullLM22[1:25,] 

clusters <- clustWspillOver(sigMatrix=smallLM22, geneExpr=fullLM22, nPasses=10, deconMatrices=NULL)
# }