- output file location (a report of detected features).
t
- the main detection threshold - controls sensitivity - not recommended below 4.
np
- number of data points required to detect a feature.
mr
- minimum mean ratio to detect a segemnt.
autoCut
- attempt noise dependant auto filtering.
Value
A list containing input data (with detection score and feature indices) and a report (detected features).
Details
Performs change point detection on a bed formatted file and allows an error value to be applied to each probe.
This is a highly efficent implementation - takes less than 2 mins to process 1 million data points (most of which is spend reading the input file!).