AFMImageFractalDimensionsAnalysis-class
AFM image fractal dimensions analysis class
Get vertex id from x,y coordinates
Save on disk an AFMImage as a Lattice (trellis) plot
getListOfDiameters
Export all data from an analysis of an AFM Image as rdata file
evaluateVariogramModels method to evaluate the basic variogram models
AFMImage3DModelAnalysis-class
AFM image Power Spectrum Density analysis class
updateProgress
Extract a portion of an AFM image.
getCoordinatesFromVertexId
Get x,y coordinates from vertex id
Generate a check report for one AFMImage
AFM image sample
Check visualy of the normality of the sample
Import data from nanoscope analysis(tm) tool
calculateNetworkSkeleton
Generate an analysis report for one AFMImage
AFMImagePSDAnalysis-class
AFM image Power Spectrum Density analysis class
Calculate networks on the surface
Calculate the shifted PSD matrix
Export an AFM Image as a STL format file.
Calculate topology image (TBC)
Get getNetworkGridLayout
AFM image class
Atomic Force Microscopy images tools
Calculate the 2D Power Spectral Density
isAdjacentToBetterVertex
AFMImageFractalDimensionMethod-class
AFM image fractal dimension method class
AFM image analyser class
simplify an AFM image.
getSurroundingVertexesList
Get surrounding vertices from x,y coordinates
AFMImageOfNormallyDistributedHeights
AFM image sample
calculateOmnidirectionalVariogram
Calculate experimental omnidirectional semi-variogram
Check the isotropy of a sample
getAutomaticWidthForVariogramCalculation
calculate a width to be used for experimental variogram calculation
getDTModelEvaluation method
Save an AFM image on disk.
Launch the AFM shiny application
Generate an analysis report from an AFMImageAnalyser object
Calculate 2D fractal dimensions and scales of an AFM Image
Get an AFMImage as a Lattice (trellis) plot
calculateDirectionalVariograms
Calculate experimental directional semi-variograms
Display a 3D image of an AFMImage and store it on disk.
AFMImageVariogramModel-class
AFM Image Variogram Model class
AFMImageOfAluminiumInterface
AFM image sample
initialize,AFMImageAnalyser-method
Constructor method of AFMImageAnalyser Class.
gridIgraphPlot
getDTModelSillRange method
Calculate the roughness of the sample against length scale
generateReportFromNanoscopeImageDirectory
Generate a pdf report for all AFM images in a directory
Calculate iGraph from AFMImage
Calculate the 3D model for 3D printing
Shift the quadrants of the FFT 2D
printVariogramModelEvaluations
printVariogramModelEvaluations
Calculate the 1D Power Spectral Density; returns a data table of PSD 1D and PSD 2D values
against spatial frequencies.
As mentionned in Sidick2009, this function calculates the
PSD against spatial frequencies in 1D from PSD2DAgainstFrequency
by using
breaks in the log space to sum PSD 2D and frequency values. Does an edge exist ?
AFMImageVariogramAnalysis-class
AFM image variogram analysis class
Calculate the total Root Mean Square Roughness (Rrms total)
AFMImageNetworksAnalysis-class
AFM image networks analysis class
Get a zero padded AFMImage
AFM image sample
Get a sample of an AFM image.
getNyquistSpatialFrequency
Get the Nyquist spatial frequency
canBeRemoved
putImagesFromAnalysisOnDisk
Put the images from all analysis on disk
Perform all the calculation for PSD exploitation
Get Roughness parameters
Analyse an AFMImage