Atomic Force Microscopy images tools
AFMImageFractalDimensionsAnalysis-class
AFM image fractal dimensions analysis class
updateProgress
calculateNetworkSkeleton
printVariogramModelEvaluations
printVariogramModelEvaluations
Calculate the 1D Power Spectral Density; returns a data table of PSD 1D and PSD 2D values
against spatial frequencies. As mentionned in Sidick2009, this function calculates the
PSD against spatial frequencies in 1D from PSD2DAgainstFrequency
by using
breaks in the log space to sum PSD 2D and frequency values. Generate an analysis report for one AFMImage
Display a 3D image of an AFMImage and store it on disk.
AFMImageOfNormallyDistributedHeights
AFM image sample
Get a sample of an AFM image.
Check visualy of the normality of the sample
getAutomaticWidthForVariogramCalculation
calculate a width to be used for experimental variogram calculation
Generate a check report for one AFMImage
AFM image sample
AFMImageVariogramModel-class
AFM Image Variogram Model class
AFMImageNetworksAnalysis-class
AFM image networks analysis class
AFMImageVariogramAnalysis-class
AFM image variogram analysis class
Does an edge exist ?
Calculate networks on the surface
gridIgraphPlot
isAdjacentToBetterVertex
AFMImagePSDAnalysis-class
AFM image Power Spectrum Density analysis class
Calculate 2D fractal dimensions and scales of an AFM Image
Save on disk an AFMImage as a Lattice (trellis) plot
Get a zero padded AFMImage
putImagesFromAnalysisOnDisk
Put the images from all analysis on disk
AFM image analyser class
canBeRemoved
Get getNetworkGridLayout
Check the isotropy of a sample
Calculate iGraph from AFMImage
getSurroundingVertexesList
Get surrounding vertices from x,y coordinates
Launch the AFM shiny application
getNyquistSpatialFrequency
Get the Nyquist spatial frequency
Get Roughness parameters
Perform all the calculation for PSD exploitation
getDTModelEvaluation method
Get vertex id from x,y coordinates
Calculate the total Root Mean Square Roughness (Rrms total)
Save an AFM image on disk.
Calculate the roughness of the sample against length scale
Extract a portion of an AFM image.
Calculate the 3D model for 3D printing
evaluateVariogramModels method to evaluate the basic variogram models
Import data from nanoscope analysis(tm) tool
Export all data from an analysis of an AFM Image as rdata file
AFM image class
Analyse an AFMImage
AFM image sample
AFMImage3DModelAnalysis-class
AFM image Power Spectrum Density analysis class
Calculate the 2D Power Spectral Density
Calculate topology image (TBC)
Get an AFMImage as a Lattice (trellis) plot
initialize,AFMImageAnalyser-method
Constructor method of AFMImageAnalyser Class.
generateReportFromNanoscopeImageDirectory
Generate a pdf report for all AFM images in a directory
calculateOmnidirectionalVariogram
Calculate experimental omnidirectional semi-variogram
calculateDirectionalVariograms
Calculate experimental directional semi-variograms
Generate an analysis report from an AFMImageAnalyser object
get a segment of points thanks to Bresenham line algorithm
AFMImageFractalDimensionMethod-class
AFM image fractal dimension method class
getCoordinatesFromVertexId
Get x,y coordinates from vertex id
Shift the quadrants of the FFT 2D
AFMImageOfAluminiumInterface
AFM image sample
getDTModelSillRange method
Export an AFM Image as a STL format file.
simplify an AFM image.
getListOfDiameters
Calculate the shifted PSD matrix