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AGDEX (version 1.20.0)

Agreement of Differential Expression Analysis

Description

A tool to evaluate agreement of differential expression for cross-species genomics

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Version

Version

1.20.0

License

GPL Version 2 or later

Maintainer

Cuilan lani Gao

Last Published

February 15th, 2017

Functions in AGDEX (1.20.0)

read.agdex.gset.details

read detailed results of gene-set analyses
human.data

Sample ExpressionSet object of human data
mouse.data

Mouse Data
map.data

Probe-set Mapping Data
get.gset.result.details

Extract gene-level details from gene-set results
make.dex.set.object

Make a list object for function agdex()
write.agdex.gset.details

write the output of get.gset.result.details to a tab-delimited text file.
agdex

Agreement of Differential Expression Analysis
agdex.res

Saved result returned by agdex()
agdex.scatterplot

scatter plot of AGDEX result
read.agdex.result

Read the output file of agdex analysis
write.agdex.result

Write the AGDEX results to output file
AGDEX-package

Agreement of differential expression analysis
gset.data

a sample gene-set data