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AGHmatrix (version 2.0.0)

Relationship Matrices for Diploid and Autopolyploid Species

Description

Computation of A (pedigree), G (genomic-base), and H (A corrected by G) relationship matrices for diploid and autopolyploid species. Several methods are implemented considering additive and non-additive models.

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Install

install.packages('AGHmatrix')

Monthly Downloads

1,346

Version

2.0.0

License

GPL-3

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Repository

https://github.com/prmunoz/AGHmatrix

Maintainer

Rodrigo Amadeu

Last Published

September 21st, 2020

Functions in AGHmatrix (2.0.0)

Amatrix

Construction of Relationship Matrix A

Gmatrix

Construction of Relationship Matrix G

Hmatrix

Construction of Combined Relationship Matrix H

datatreat

Organizes pedigree data in a chronological way

formatmatrix

Transform a matrix in 3 columns

missingdata

Survying on missing data

snp.pine

Molecular data for diploid examples

snp.sol

Molecular data for autopolyploid examples

ped.mrode

Pedigree Data

ped.sol

Pedigree data for autopolyploid examples