combine.streams

Takes a list l, where every element is itself a list of 3D arrays. Each
array should have matching first and second dimentions. This function
combines those arrays along the third dimension.

Provides scalable generalized linear and mixed effects models tailored for sequence count data analysis (e.g., analysis of 16S or RNA-seq data). Uses Dirichlet-multinomial sampling to quantify uncertainty in relative abundance or relative expression conditioned on observed count data.
Implements scale models as a generalization of normalizations which account for uncertainty in scale (e.g., total abundances) as described in Nixon et al. (2025) <doi:10.1186/s13059-025-03609-3> and McGovern et al. (2025) <doi:10.1101/2025.08.05.668734>.

Justin Silverman

ALDEx3

Linear Models for Sequence Count Data

Greg Gloor

Kyle McGovern

combine.streams function

<dl><dt>l</dt>
<dd>a list, where every element is itself a list of 3D arrays.</dd></dl>

Arguments

Author

Combine output from aldex streams (internal only) — combine.streams

<dl>

<dt>l</dt>
<dd>a list, where every element is itself a list of 3D arrays.</dd>

</dl>

combine.streams: Combine output from aldex streams (internal only)

Description

Usage

Value

Arguments

Author